Installation

From PyPI:

pip install miniscope_io

From git repository, using pip:

git clone https://github.com/Aharoni-Lab/miniscope-io
cd miniscope-io
pip install .

Or poetry:

git clone https://github.com/Aharoni-Lab/miniscope-io
cd miniscope-io
poetry install

Additional Dependencies

OpalKelly

miniscope_io.vendor.opalkelly - used for FPGA I/O

Linux

We package the OpalKelly FrontPanel SDK here, but it has an unadvertised dependency on some system level packages:

• liblua5.3-0

So eg. on debian/ubuntu you’ll need to:

apt install liblua5.3-0

Mac

No special installation should be required.

Windows

Currently windows is not implemented - see miniscope_io/vencor/opalkelly/README.md for what was done to implement Linux and Mac to see what might need to be done here, pull requests welcome :)