Index

Symbols

--binary_export mio-stream-capture command line option mio-stream-test command line option --device_config mio-stream-capture command line option mio-stream-test command line option --metadata_display mio-stream-capture command line option mio-stream-test command line option --no-display mio-stream-capture command line option mio-stream-test command line option --output mio-stream-capture command line option mio-stream-test command line option --output-kwarg mio-stream-capture command line option mio-stream-test command line option --profile mio-stream-test command line option --source mio-stream-test command line option

--version mio command line option -b mio-stream-capture command line option mio-stream-test command line option -c mio-stream-capture command line option mio-stream-test command line option -m mio-stream-capture command line option mio-stream-test command line option -o mio-stream-capture command line option mio-stream-test command line option -ok mio-stream-capture command line option mio-stream-test command line option -p mio-stream-test command line option -s mio-stream-test command line option

_

_reverse_bits_in_array() (miniscope_io.bit_operation.BufferFormatter static method)

_reverse_byte_order_in_array() (miniscope_io.bit_operation.BufferFormatter static method)

A

append() (miniscope_io.io.BufferedCSVWriter method)

B

base_dir (miniscope_io.models.config.Config attribute) battery_cutoff (miniscope_io.models.sdcard.SDHeaderPositions attribute) battery_voltage (miniscope_io.models.sdcard.SDBufferHeader attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) (miniscope_io.models.stream.StreamBufferHeader attribute) (miniscope_io.models.stream.StreamBufferHeaderFormat attribute) battery_voltage() (in module miniscope_io.plots.headers) baudrate (miniscope_io.models.stream.StreamDevConfig attribute) bitstream (miniscope_io.models.stream.StreamDevConfig attribute) block_size (miniscope_io.models.stream.StreamDevConfig attribute) buffer (miniscope_io.io.BufferedCSVWriter attribute) (miniscope_io.models.sdcard.SDLayout attribute)

buffer_block_length (miniscope_io.models.stream.StreamDevConfig attribute) buffer_count (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) buffer_count() (in module miniscope_io.plots.headers) buffer_npix (miniscope_io.stream_daq.StreamDaq property) buffer_size (miniscope_io.io.BufferedCSVWriter attribute) (miniscope_io.models.sdcard.ConfigPositions attribute) (miniscope_io.models.sdcard.SDConfig attribute) BufferedCSVWriter (class in miniscope_io.io) BufferFormatter (class in miniscope_io.bit_operation) bytebuffer_to_ndarrays() (miniscope_io.bit_operation.BufferFormatter class method)

C

capture() (miniscope_io.stream_daq.StreamDaq method) check_valid() (miniscope_io.io.SDCard method) close() (miniscope_io.io.BufferedCSVWriter method) close_plot() (miniscope_io.plots.headers.StreamPlotter method)

config (miniscope_io.io.SDCard property) (miniscope_io.models.sdcard.SDLayout attribute) (miniscope_io.models.sdcard.SectorConfig attribute) csvwriter (miniscope_io.models.stream.StreamDevRuntime attribute)

D

data (miniscope_io.models.sdcard.SectorConfig attribute) data_length (miniscope_io.models.sdcard.SDBufferHeader attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) delay_start (miniscope_io.models.sdcard.SDHeaderPositions attribute) device (miniscope_io.models.stream.StreamDevConfig attribute) DeviceConfigurationError

DeviceError DeviceOpenError dropped_buffer_count (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeader attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) dropped_buffers() (in module miniscope_io.plots.headers)

E

EndOfRecordingException ewl (miniscope_io.models.sdcard.SDHeaderPositions attribute)

ewl_pos (miniscope_io.models.stream.StreamBufferHeader attribute) (miniscope_io.models.stream.StreamBufferHeaderFormat attribute) exact_iter() (in module miniscope_io.stream_daq)

F

file_n (miniscope_io.models.config.LogConfig attribute) file_path (miniscope_io.io.BufferedCSVWriter attribute) file_size (miniscope_io.models.config.LogConfig attribute) flush_buffer() (miniscope_io.io.BufferedCSVWriter method) folder_exists() (miniscope_io.models.config.Config class method) frame (miniscope_io.io.SDCard property) frame_buffer_count (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) frame_buffer_queue_size (miniscope_io.models.stream.StreamDevRuntime attribute) frame_count (miniscope_io.io.SDCard property)

frame_height (miniscope_io.models.stream.StreamDevConfig attribute) frame_num (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) frame_width (miniscope_io.models.stream.StreamDevConfig attribute) from_format() (miniscope_io.models.buffer.BufferHeader class method) from_yaml() (miniscope_io.models.mixins.YAMLMixin class method) fs (miniscope_io.models.sdcard.ConfigPositions attribute) (miniscope_io.models.sdcard.SDConfig attribute) (miniscope_io.models.sdcard.SDHeaderPositions attribute) (miniscope_io.models.stream.StreamDevConfig attribute)

G

gain (miniscope_io.models.sdcard.SDHeaderPositions attribute)

H

hash_file() (in module miniscope_io.utils) hash_video() (in module miniscope_io.utils) header (miniscope_io.models.sdcard.SDLayout attribute) (miniscope_io.models.sdcard.SectorConfig attribute)

header_len (miniscope_io.models.stream.StreamDevConfig attribute) height (miniscope_io.models.sdcard.ConfigPositions attribute) (miniscope_io.models.sdcard.SDConfig attribute)

I

image_buffer_queue_size (miniscope_io.models.stream.StreamDevRuntime attribute) inherit_base_level() (miniscope_io.models.config.LogConfig method)

init_logger() (in module miniscope_io.logging) init_video() (miniscope_io.stream_daq.StreamDaq method) InvalidSDException

L

led (miniscope_io.models.sdcard.SDHeaderPositions attribute) length (miniscope_io.models.sdcard.SDBufferHeader attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) level (miniscope_io.models.config.LogConfig attribute) level_file (miniscope_io.models.config.LogConfig attribute)

level_stdout (miniscope_io.models.config.LogConfig attribute) linked_list (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute) log_dir (miniscope_io.models.config.Config attribute) logs (miniscope_io.models.config.Config attribute)

M

miniscope_io.bit_operation module miniscope_io.data module miniscope_io.exceptions module miniscope_io.formats module miniscope_io.formats.sdcard module miniscope_io.formats.stream module miniscope_io.io module miniscope_io.logging module miniscope_io.models module miniscope_io.models.buffer module miniscope_io.models.config module miniscope_io.models.mixins module miniscope_io.models.models module miniscope_io.models.sdcard module miniscope_io.models.stream module miniscope_io.plots.headers module miniscope_io.stream_daq module miniscope_io.utils module mio command line option --version mio-stream-capture command line option --binary_export --device_config --metadata_display --no-display --output --output-kwarg -b -c -m -o -ok

mio-stream-test command line option --binary_export --device_config --metadata_display --no-display --output --output-kwarg --profile --source -b -c -m -o -ok -p -s module miniscope_io.bit_operation miniscope_io.data miniscope_io.exceptions miniscope_io.formats miniscope_io.formats.sdcard miniscope_io.formats.stream miniscope_io.io miniscope_io.logging miniscope_io.models miniscope_io.models.buffer miniscope_io.models.config miniscope_io.models.mixins miniscope_io.models.models miniscope_io.models.sdcard miniscope_io.models.stream miniscope_io.plots.headers miniscope_io.stream_daq miniscope_io.utils

N

n_buffers_dropped (miniscope_io.models.sdcard.ConfigPositions attribute) (miniscope_io.models.sdcard.SDConfig attribute) n_buffers_recorded (miniscope_io.models.sdcard.ConfigPositions attribute) (miniscope_io.models.sdcard.SDConfig attribute)

nbuffer_per_fm (miniscope_io.stream_daq.StreamDaq property) num_buffers (miniscope_io.models.stream.StreamDevConfig attribute)

O

okDev (class in miniscope_io.devices.opalkelly)

P

paths_relative_to_basedir() (miniscope_io.models.config.Config method) pix_depth (miniscope_io.models.stream.StreamDevConfig attribute) pixel_count (miniscope_io.models.stream.StreamBufferHeader attribute) (miniscope_io.models.stream.StreamBufferHeaderFormat attribute) plot (miniscope_io.models.stream.StreamDevRuntime attribute)

plot_headers() (in module miniscope_io.plots.headers) port (miniscope_io.models.stream.StreamDevConfig attribute) position (miniscope_io.io.SDCard property) positions (miniscope_io.io.SDCard attribute) preamble (miniscope_io.models.stream.StreamDevConfig attribute) preamble_to_bytes() (miniscope_io.models.stream.StreamDevConfig class method)

R

read() (miniscope_io.io.SDCard method) readData() (miniscope_io.devices.opalkelly.okDev method) ReadHeaderException record_length (miniscope_io.models.sdcard.SDHeaderPositions attribute) resolve_relative() (miniscope_io.models.stream.StreamDevConfig class method)

reverse_header_bits (miniscope_io.models.stream.StreamDevConfig attribute) reverse_header_bytes (miniscope_io.models.stream.StreamDevConfig attribute) reverse_payload_bits (miniscope_io.models.stream.StreamDevConfig attribute) reverse_payload_bytes (miniscope_io.models.stream.StreamDevConfig attribute) runtime (miniscope_io.models.stream.StreamDevConfig attribute)

S

SDCard (class in miniscope_io.io) SDException sectors (miniscope_io.models.sdcard.SDLayout attribute) serial_buffer_queue_size (miniscope_io.models.stream.StreamDevRuntime attribute) setWire() (miniscope_io.devices.opalkelly.okDev method)

size (miniscope_io.models.sdcard.SectorConfig attribute) skip() (miniscope_io.io.SDCard method) StreamDaq (class in miniscope_io.stream_daq) StreamError StreamPlotter (class in miniscope_io.plots.headers) StreamReadError

T

timestamp (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute)

timestamps() (in module miniscope_io.plots.headers) to_img() (miniscope_io.io.SDCard method) to_video() (miniscope_io.io.SDCard method)

U

update() (miniscope_io.plots.headers.StreamPlotter method)

uploadBit() (miniscope_io.devices.opalkelly.okDev method) uppercase_levels() (miniscope_io.models.config.LogConfig class method)

V

version (miniscope_io.models.sdcard.SDLayout attribute)

W

width (miniscope_io.models.sdcard.ConfigPositions attribute) (miniscope_io.models.sdcard.SDConfig attribute) WireFreeSDLayout_Battery (in module miniscope_io.formats.sdcard) word_size (miniscope_io.models.sdcard.SDLayout attribute) write_buffer_count (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeader attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute)

write_key0 (miniscope_io.models.sdcard.SDLayout attribute) write_key1 (miniscope_io.models.sdcard.SDLayout attribute) write_key2 (miniscope_io.models.sdcard.SDLayout attribute) write_key3 (miniscope_io.models.sdcard.SDLayout attribute) write_timestamp (miniscope_io.models.buffer.BufferHeader attribute) (miniscope_io.models.buffer.BufferHeaderFormat attribute) (miniscope_io.models.sdcard.SDBufferHeader attribute) (miniscope_io.models.sdcard.SDBufferHeaderFormat attribute)

Y

YAMLMixin (class in miniscope_io.models.mixins)